Developped under the supervision of Nadège Guiglielmoni and Jean-François Flot
GraphUnzip untangles assembly graphs with the help of long reads and/or Hi-C. It is designed to distinguish the different haplotypes present. Written in Python.
Presented the key idea for the first time at JOBIM 2021
The long read algorithm was presented for the first time at SeqBIM 2021 thanks to a grant from the SFBI.
Developped under the supervision of Dominique Lavenier
QuickDeconvolution aims at answering the barcode deconvolution problem when dealing with barcoded reads. It strives at being scalable and parallelisable. Written in C++.
20h of practical sessions with 1st year bachelor computer science students in Rennes 1, Fall 2021
34h of practical sessions with 1st year master bioinformatics students in Rennes 1, Winter 2022